Altıntan, Derya ; Koeppl, Heinz (2024)
Hybrid master equation for jump-diffusion approximation of biomolecular reaction networks.
In: BIT Numerical Mathematics, 2020, 60 (2)
doi: 10.26083/tuprints-00027079
Article, Secondary publication, Publisher's Version

Benenson, Yaakov ; Dalchau, Neil ; Koeppl, Heinz ; Maler, Oded (2024)
Formal Methods for the Synthesis of Biomolecular Circuits.
In: Dagstuhl Reports, 2018, 8 (2)
doi: 10.26083/tuprints-00026921
Article, Secondary publication, Publisher's Version

Cui, Kai (2024)
Large-Scale Multi-Agent Reinforcement Learning via Mean Field Games.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00028568
Ph.D. Thesis, Primary publication, Publisher's Version

Cui, Kai ; Baumgärtner, Lars ; Yilmaz, Mustafa Burak ; Li, Mengguang ; Fabian, Christian ; Becker, Benjamin ; Xiang, Lin ; Bauer, Maximilian ; Koeppl, Heinz (2024)
UAV Swarms for Joint Data Ferrying and Dynamic Cell Coverage via Optimal Transport Descent and Quadratic Assignment.
2023 IEEE 48th Conference on Local Computer Networks (LCN). Daytona Beach, FL, USA (02.10.2023-05.10.2023)
doi: 10.26083/tuprints-00028857
Conference or Workshop Item, Secondary publication, Postprint

Cui, Kai ; Dayanıklı, Gökçe ; Laurière, Mathieu ; Geist, Matthieu ; Pietquin, Olivier ; Koeppl, Heinz (2024)
Learning Discrete-Time Major-Minor Mean Field Games.
38th AAAI Conference on Artificial Intelligence. Vancouver, Canada (20.02.2024 - 27.02.2024)
doi: 10.26083/tuprints-00028687
Conference or Workshop Item, Secondary publication, Postprint

Cui, Kai ; Hauck, Sascha ; Fabian, Christian ; Koeppl, Heinz (2024)
Learning Decentralized Partially Observable Mean Field Control for Artificial Collective Behavior.
International Conference on Learning Representations. Vienna, Austria (07.05.2024 - 11.05.2024)
doi: 10.26083/tuprints-00028689
Conference or Workshop Item, Secondary publication, Publisher's Version

Cui, Kai ; KhudaBukhsh, Wasiur R. ; Koeppl, Heinz (2024)
Hypergraphon mean field games.
In: Chaos: An Interdisciplinary Journal of Nonlinear Science, 2022, 32 (11)
doi: 10.26083/tuprints-00026621
Article, Secondary publication, Publisher's Version

Cui, Kai ; KhudaBukhsh, Wasiur R. ; Koeppl, Heinz (2024)
Motif-based mean-field approximation of interacting particles on clustered networks.
In: Physical Review E, 2022, 105 (4)
doi: 10.26083/tuprints-00028854
Article, Secondary publication, Publisher's Version

Cui, Kai ; Koeppl, Heinz (2022)
Approximately Solving Mean Field Games via Entropy-Regularized Deep Reinforcement Learning.
24th International Conference on Artificial Intelligence and Statistics (AISTATS) 2021. Virtual (13.04.2021-15.04.2021)
doi: 10.26083/tuprints-00021511
Conference or Workshop Item, Secondary publication, Publisher's Version

Cui, Kai ; Li, Mengguang ; Fabian, Christian ; Koeppl, Heinz (2024)
Scalable Task-Driven Robotic Swarm Control via Collision Avoidance and Learning Mean-Field Control.
2023 IEEE International Conference on Robotics and Automation (ICRA). London, United Kingdom (29.05.2023-02.06.2023)
doi: 10.1109/ICRA48891.2023.10161498
Conference or Workshop Item, Secondary publication, Postprint

Cui, Kai ; Tahir, Anam ; Sinzger, Mark ; Koeppl, Heinz (2024)
Discrete-Time Mean Field Control with Environment States.
2021 60th IEEE Conference on Decision and Control (CDC). Austin, TX, USA (14.12.2021-17.12.2021)
doi: 10.26083/tuprints-00028856
Conference or Workshop Item, Secondary publication, Postprint

Cui, Kai ; Yilmaz, Mustafa Burak ; Tahir, Anam ; Klein, Anja ; Koeppl, Heinz (2024)
Optimal Offloading Strategies for Edge-Computing via Mean-Field Games and Control.
GLOBECOM 2022 - 2022 IEEE Global Communications Conference. Rio de Janeiro, Brazil (04.12.2022-08.12.2022)
doi: 10.26083/tuprints-00028855
Conference or Workshop Item, Secondary publication, Postprint

Danos, Vincent ; Koeppl, Heinz (2024)
Self-assembly and Self-organization in Computer Science and Biology.
In: Dagstuhl Reports, 2016, 5 (9)
doi: 10.26083/tuprints-00026922
Article, Secondary publication, Publisher's Version

Eich, Yannick ; Alt, Bastian ; Koeppl, Heinz (2024)
Approximate Control for Continuous-Time POMDPs.
International Conference on Artificial Intelligence and Statistics. Valencia, Spain (02.05.2024 - 04.05.2024)
doi: 10.26083/tuprints-00028690
Conference or Workshop Item, Secondary publication, Publisher's Version

Engelmann, Nicolai ; Linzner, Dominik ; Koeppl, Heinz (2022)
Continuous Time Bayesian Networks with Clocks.
37th International Conference on Machine Learning. Online (12.07.2020-18.07.2020)
doi: 10.26083/tuprints-00021516
Conference or Workshop Item, Secondary publication, Publisher's Version

Ermentrout, Bard ; Zechner, Christoph ; Koeppl, Heinz (2024)
Uncoupled Analysis of Stochastic Reaction Networks in Fluctuating Environments.
In: PLoS Computational Biology, 2014, 10 (12)
doi: 10.26083/tuprints-00026931
Article, Secondary publication, Publisher's Version

Fabian, Christian ; Cui, Kai ; Koeppl, Heinz (2024)
Learning Mean Field Games on Sparse Graphs: A Hybrid Graphex Approach.
International Conference on Learning Representations. Vienna, Austria (07.05.2024 - 11.05.2024)
doi: 10.26083/tuprints-00028691
Conference or Workshop Item, Secondary publication, Postprint

Fabian, Christian ; Cui, Kai ; Koeppl, Heinz (2024)
Learning Sparse Graphon Mean Field Games.
International Conference on Artificial Intelligence and Statistics. Palau de Congressos, Valencia, Spain (25.04.2023 - 27.04.2023)
doi: 10.26083/tuprints-00028917
Conference or Workshop Item, Secondary publication, Publisher's Version

Fabian, Christian ; Cui, Kai ; Koeppl, Heinz (2024)
Mean Field Games on Weighted and Directed Graphs via Colored Digraphons.
In: IEEE Control Systems Letters, 2023, 7
doi: 10.26083/tuprints-00026543
Article, Secondary publication, Publisher's Version

Hill, Steven M. ; Heiser, Laura M. ; Cokelaer, Thomas ; Unger, Michael ; Nesser, Nicole K. ; Carlin, Daniel E. ; Zhang, Yang ; Sokolov, Artem ; Paull, Evan O. ; Wong, Chris K. ; Graim, Kiley ; Bivol, Adrian ; Wang, Haizhou ; Zhu, Fan ; Afsari, Bahman ; Danilova, Ludmila V. ; Favorov, Alexander V. ; Lee, Wai Shing ; Taylor, Dane ; Hu, Chenyue W. ; Long, Byron L. ; Noren, David P. ; Bisberg, Alexander J. ; Mills, Gordon B. ; Gray, Joe W. ; Kellen, Michael ; Norman, Thea ; Friend, Stephen ; Qutub, Amina A. ; Fertig, Elana J. ; Guan, Yuanfang ; Song, Mingzhou ; Stuart, Joshua M. ; Spellman, Paul T. ; Koeppl, Heinz ; Stolovitzky, Gustavo ; Saez-Rodriguez, Julio ; Mukherjee, Sach (2024)
Inferring causal molecular networks: empirical assessment through a community-based effort.
In: Nature Methods, 2016, 13 (4)
doi: 10.26083/tuprints-00027016
Article, Secondary publication, Publisher's Version

Ion, Ion Gabriel ; Wildner, Christian ; Loukrezis, Dimitrios ; Koeppl, Heinz ; De Gersem, Herbert (2024)
Tensor-train approximation of the chemical master equation and its application for parameter inference.
In: The Journal of Chemical Physics, 2021, 155 (3)
doi: 10.26083/tuprints-00026628
Article, Secondary publication, Publisher's Version

Kar, Sounak ; Rehrmann, Robin ; Mukhopadhyay, Arpan ; Alt, Bastian ; Ciucu, Florin ; Koeppl, Heinz ; Binnig, Carsten ; Rizk, Amr (2022)
On the Throughput Optimization in Large-scale Batch-processing Systems.
In: Performance Evaluation, 2020, 144
doi: 10.26083/tuprints-00021522
Article, Secondary publication, Postprint

Khuda Bukhsh, Wasiur R. ; Kar, Sounak ; Alt, Bastian ; Rizk, Amr ; Koeppl, Heinz (2022)
Generalized Cost-Based Job Scheduling in Very Large Heterogeneous Cluster Systems.
In: IEEE Transactions on Parallel and Distributed Systems, 2020, 31 (11)
doi: 10.26083/tuprints-00021667
Article, Secondary publication, Postprint

Kramat, Janice ; Kraus, Leon ; Gunawan, Vincent J. ; Smyej, Elias ; Froehlich, Philipp ; Weber, Tim E. ; Spiehl, Dieter ; Koeppl, Heinz ; Blaeser, Andreas ; Suess, Beatrix (2024)
Sensing Levofloxacin with an RNA Aptamer as a Bioreceptor.
In: Biosensors, 2024, 14 (1)
doi: 10.26083/tuprints-00027255
Article, Secondary publication, Publisher's Version

Kruk, Nikita ; Carrillo, José A. ; Koeppl, Heinz (2022)
Traveling bands, clouds, and vortices of chiral active matter.
In: Physical Review E, 2020, 102 (2)
doi: 10.26083/tuprints-00021567
Article, Secondary publication, Publisher's Version

Kruk, Nikita ; Carrillo, José A. ; Koeppl, Heinz (2024)
A finite volume method for continuum limit equations of nonlocally interacting active chiral particles.
In: Journal of Computational Physics, 2021, 440
doi: 10.26083/tuprints-00026629
Article, Secondary publication, Publisher's Version

Kruk, Nikita ; Maistrenko, Yuriy ; Koeppl, Heinz (2022)
Solitary states in the mean-field limit.
In: Chaos: An Interdisciplinary Journal of Nonlinear Science, 2020, 30 (11)
doi: 10.26083/tuprints-00021568
Article, Secondary publication, Publisher's Version

Kubaczka, Erik ; Gehringer, Maximilian ; Marlhens, Jérémie J. M. ; Schwarz, Tobias ; Molderings, Maik ; Engelmann, Nicolai ; Garcia, Hernan G. ; Hochberger, Christian ; Koeppl, Heinz (2024)
Energy Aware Technology Mapping of Genetic Logic Circuits.
In: ACS Synthetic Biology, 2024, 13 (10)
doi: 10.26083/tuprints-00028688
Article, Secondary publication, Publisher's Version

Kumar, Sunil ; Lun, Xiao-Kang ; Bodenmiller, Bernd ; Rodríguez Martínez, María ; Koeppl, Heinz (2022)
Stabilized Reconstruction of Signaling Networks from Single-Cell Cue-Response Data.
In: Scientific Reports, 2020, (1)
doi: 10.26083/tuprints-00021513
Article, Secondary publication, Publisher's Version

Köhs, Lukas (2023)
Bayesian inference and learning in switching biological systems.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00023022
Ph.D. Thesis, Primary publication, Publisher's Version

Ourari, Ramzi ; Cui, Kai ; Elshamanhory, Ahmed ; Koeppl, Heinz (2024)
Nearest-Neighbor-based Collision Avoidance for Quadrotors via Reinforcement Learning.
2022 IEEE International Conference on Robotics and Automation (ICRA). Philadelphia, PA, USA (23.05.2022-27.05.2022)
doi: 10.26083/tuprints-00028926
Conference or Workshop Item, Secondary publication, Postprint

Prangemeier, Tim ; Reich, Christoph ; Koeppl, Heinz (2022)
Attention-Based Transformers for Instance Segmentation of Cells in Microstructures.
IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2020). virtual Conference (16.12.2020-19.12.2020)
doi: 10.26083/tuprints-00021666
Conference or Workshop Item, Secondary publication, Postprint

Prangemeier, Tim ; Wildner, Christian ; Françani, André O. ; Reich, Christoph ; Koeppl, Heinz (2022)
Multiclass Yeast Segmentation in Microstructured Environments with Deep Learning.
IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (IEEE CIBCB). Online (27.10.2020-29.10.2020)
doi: 10.26083/tuprints-00021524
Conference or Workshop Item, Secondary publication, Postprint

Reich, Christoph ; Prangemeier, Tim ; Ozdemir, Cetin ; Koeppl, Heinz (2024)
OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data.
32nd British Machine Vision Conference. Virtual Conference (22.11.2021-25.11.2021)
doi: 10.26083/tuprints-00028914
Conference or Workshop Item, Secondary publication, Publisher's Version

Schladt, Tobias ; Engelmann, Nicolai ; Kubaczka, Erik ; Hochberger, Christian ; Koeppl, Heinz (2024)
Automated Design of Robust Genetic Circuits: Structural Variants and Parameter Uncertainty.
In: ACS Synthetic Biology, 2021, 10 (12)
doi: 10.26083/tuprints-00026627
Article, Secondary publication, Publisher's Version

Sharifian, Hoda ; Lampert, Fabienne ; Stojanovski, Klement ; Regot, Sergi ; Vaga, Stefania ; Buser, Raymond ; Lee, Sung Sik ; Koeppl, Heinz ; Posas, Francesc ; Pelet, Serge ; Peter, Matthias (2024)
Parallel feedback loops control the basal activity of the HOG MAPK signaling cascade.
In: Integrative Biology, 2015, 7 (4)
doi: 10.26083/tuprints-00026924
Article, Secondary publication, Publisher's Version

Sinzger-D'Angelo, Mark (2024)
Chemical reaction networks in random environments.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00028086
Ph.D. Thesis, Primary publication, Publisher's Version

Sreedhara, Akash Kopparam ; Padala, Deepesh ; Mahesh, Shashank ; Cui, Kai ; Li, Mengguang ; Koeppl, Heinz (2024)
Optimal Collaborative Transportation for Under-Capacitated Vehicle Routing Problems using Aerial Drone Swarms.
2024 IEEE International Conference on Robotics and Automation (ICRA). Yokohama, Japan (13.05.2024-17.05.2024)
doi: 10.26083/tuprints-00028686
Conference or Workshop Item, Secondary publication, Postprint

Sulaimanov, Nurgazy ; Koeppl, Heinz (2024)
Graph reconstruction using covariance-based methods.
In: EURASIP Journal on Bioinformatics and Systems Biology, 2016
doi: 10.26083/tuprints-00026979
Article, Secondary publication, Publisher's Version

Tahir, Anam (2024)
Scalable Planning in Large Multi-Agent Queuing Systems.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00027525
Ph.D. Thesis, Primary publication, Publisher's Version

Tahir, Anam ; Alt, Bastian ; Rizk, Amr ; Koeppl, Heinz (2024)
Load Balancing in Compute Clusters With Delayed Feedback.
In: IEEE Transactions on Computers, 2023, 72 (6)
doi: 10.26083/tuprints-00026536
Article, Secondary publication, Publisher's Version

Tahir, Anam ; Cui, Kai ; Koeppl, Heinz (2024)
Learning Mean-Field Control for Delayed Information Load Balancing in Large Queuing Systems.
51st International Conference on Parallel Processing (ICPP ’22). Bordeaux, France (29.08.2022-01.09.2022)
doi: 10.26083/tuprints-00026518
Conference or Workshop Item, Secondary publication, Publisher's Version

Wildner, Christian ; Koeppl, Heinz (2022)
Moment-Based Variational Inference for Stochastic Differential Equations.
24th International Conference on Artificial Intelligence and Statistics (AISTATS) 2021. Virtual (13.04.2021-15.04.2021)
doi: 10.26083/tuprints-00021512
Conference or Workshop Item, Secondary publication, Publisher's Version

Yang, Sikun ; Koeppl, Heinz (2022)
The Hawkes Edge Partition Model for Continuous-time Event-based Temporal Networks.
Conference on Uncertainty in Artificial Intelligence (UAI). Online (03.08.2020-06.08.2020)
doi: 10.26083/tuprints-00021515
Conference or Workshop Item, Secondary publication, Publisher's Version

Šošić, Adrian ; Rueckert, Elmar ; Peters, Jan ; Zoubir, Abdelhak M. ; Koeppl, Heinz (2024)
Inverse Reinforcement Learning via Nonparametric Spatio-Temporal Subgoal Modeling.
In: Journal of Machine Learning Research, 2018, 19 (69)
doi: 10.26083/tuprints-00026700
Article, Secondary publication, Publisher's Version