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The need for open and FAIR data in top‐down proteomics

Lermyte, Frederik (2024)
The need for open and FAIR data in top‐down proteomics.
In: Proteomics : Proteomics and Systems Biology, 2024, 24 (3-4)
doi: 10.26083/tuprints-00027108
Article, Secondary publication, Publisher's Version

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Item Type: Article
Type of entry: Secondary publication
Title: The need for open and FAIR data in top‐down proteomics
Language: English
Date: 17 June 2024
Place of Publication: Darmstadt
Year of primary publication: February 2024
Place of primary publication: Weinheim
Publisher: Wiley-VCH
Journal or Publication Title: Proteomics : Proteomics and Systems Biology
Volume of the journal: 24
Issue Number: 3-4
Collation: 3 Seiten
DOI: 10.26083/tuprints-00027108
Corresponding Links:
Origin: Secondary publication DeepGreen
Abstract:

In recent years, there has been a tremendous evolution in the high‐throughput, tandem mass spectrometry‐based analysis of intact proteins, also known as top‐down proteomics (TDP). Both hardware and software have developed to the point that the technique has largely entered the mainstream, and large‐scale, ambitious, multi‐laboratory initiatives have started to make their appearance in the literature. For this, however, more convenient and robust data sharing and reuse will be required. Walzer et al. have created TopDownApp, a customisable, open platform for visualisation and analysis of TDP data, which they hope will be a step in this direction. As they point out, other benefits of such data sharing and interoperability would include reanalysis of published datasets, as well as the prospect of using large amounts of data to train machine learning algorithms. In time, this work could prove to be a valuable resource in the move towards a future of greater TDP data findability, accessibility, interoperability and reusability.

Uncontrolled Keywords: FAIR data, mass spectrometry, open science, top‐down proteomics
Identification Number: Artikel-ID: 2300354
Status: Publisher's Version
URN: urn:nbn:de:tuda-tuprints-271087
Additional Information:

Special Issue: Top‐down proteomics and proteoforms

Classification DDC: 500 Science and mathematics > 540 Chemistry
500 Science and mathematics > 570 Life sciences, biology
Divisions: 07 Department of Chemistry > Clemens-Schöpf-Institut > Fachgebiet Biochemie
Date Deposited: 17 Jun 2024 12:43
Last Modified: 19 Jun 2024 06:16
SWORD Depositor: Deep Green
URI: https://tuprints.ulb.tu-darmstadt.de/id/eprint/27108
PPN: 519209850
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