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Site‐Specific Antibody Fragment Conjugates for Reversible Staining in Fluorescence Microscopy

Schwach, Jonathan ; Kolobynina, Ksenia ; Brandstetter, Katharina ; Gerlach, Marcus ; Ochtrop, Philipp ; Helma, Jonas ; Hackenberger, Christian P. R. ; Harz, Hartmann ; Cardoso, M. Cristina ; Leonhardt, Heinrich ; Stengl, Andreas (2024)
Site‐Specific Antibody Fragment Conjugates for Reversible Staining in Fluorescence Microscopy.
In: ChemBioChem, 2020, 22 (7)
doi: 10.26083/tuprints-00017776
Article, Secondary publication, Publisher's Version

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Item Type: Article
Type of entry: Secondary publication
Title: Site‐Specific Antibody Fragment Conjugates for Reversible Staining in Fluorescence Microscopy
Language: English
Date: 5 January 2024
Place of Publication: Darmstadt
Year of primary publication: 2020
Place of primary publication: Weinheim
Publisher: Wiley-VCH
Journal or Publication Title: ChemBioChem
Volume of the journal: 22
Issue Number: 7
DOI: 10.26083/tuprints-00017776
Corresponding Links:
Origin: Secondary publication DeepGreen
Abstract:

Antibody conjugates have taken a great leap forward as tools in basic and applied molecular life sciences that was enabled by the development of chemoselective reactions for the site‐specific modification of proteins. Antibody‐oligonucleotide conjugates combine the antibody's target specificity with the reversible, sequence‐encoded binding properties of oligonucleotides like DNAs or peptide nucleic acids (PNAs), allowing sequential imaging of large numbers of targets in a single specimen. In this report, we use the Tub‐tag® technology in combination with Cu‐catalyzed azide‐alkyne cycloaddition for the site‐specific conjugation of single DNA and PNA strands to an eGFP‐binding nanobody. We show binding of the conjugate to recombinant eGFP and subsequent sequence‐specific annealing of fluorescently labelled imager strands. Furthermore, we reversibly stain eGFP‐tagged proteins in human cells, thus demonstrating the suitability of our conjugation strategy to generate antibody‐oligonucleotides for reversible immunofluorescence imaging.

Alternative Abstract:
Alternative AbstractLanguage

Protein-oligonucleotide conjugates. We present a novel strategy for the efficient and site-specific generation of nanobody-oligonucleotide conjugates in a 1 : 1 stoichiometry by Tub-tag-mediated conjugation. We show a proof-of-concept that these conjugates can readily be used for reversible staining in confocal fluorescence microscopy.

English
Uncontrolled Keywords: antibody conjugates, immunofluorescence staining, nanobodies, peptide nucleic acids, super-resolution microscopy, Tub-tag labelling
Status: Publisher's Version
URN: urn:nbn:de:tuda-tuprints-177764
Additional Information:

This article also appears in: Frontiers in Medicinal Chemistry 2022 SPP 1623 - Chemoselective reactions for the synthesis and application of functional proteins

Classification DDC: 500 Science and mathematics > 540 Chemistry
500 Science and mathematics > 570 Life sciences, biology
Divisions: 10 Department of Biology > Cell Biology and Epigenetics
Date Deposited: 05 Jan 2024 13:56
Last Modified: 11 Jan 2024 13:56
SWORD Depositor: Deep Green
URI: https://tuprints.ulb.tu-darmstadt.de/id/eprint/17776
PPN: 514561688
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