Wack, Julia S. ; Brahm, Kevin ; Babel, Philipp ; Dalton, James A. R. ; Schmitz, Katja (2023)
Effect of macrocyclization and tetramethylrhodamine labeling on chemokine binding peptides.
In: Journal of Peptide Science, 2023, 29 (7)
doi: 10.26083/tuprints-00024298
Article, Secondary publication, Publisher's Version
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Item Type: | Article |
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Type of entry: | Secondary publication |
Title: | Effect of macrocyclization and tetramethylrhodamine labeling on chemokine binding peptides |
Language: | English |
Date: | 7 August 2023 |
Place of Publication: | Darmstadt |
Year of primary publication: | 2023 |
Publisher: | John Wiley & Sons |
Journal or Publication Title: | Journal of Peptide Science |
Volume of the journal: | 29 |
Issue Number: | 7 |
Collation: | 15 Seiten |
DOI: | 10.26083/tuprints-00024298 |
Corresponding Links: | |
Origin: | Secondary publication DeepGreen |
Abstract: | Receptor‐derived peptides have played an important role in elucidating chemokine‐receptor interactions. For the inflammatory chemokine CXC‐class chemokine ligand 8 (CXCL8), a site II‐mimetic peptide has been derived from parts of extracellular loops 2 and 3 and adjacent transmembrane helices of its receptor CXC‐class chemokine receptor 1 (Helmer et al., RSC Adv., 2015, 5, 25657). The peptide sequence with a C‐terminal glutamine did not bind to CXCL8, whereas one with a C‐terminal glutamate did but with low micromolar affinity. We sought to improve the affinity and protease stability of the latter peptide through cyclization while also cyclizing the former for control purposes. To identify a cyclization strategy that permits a receptor‐like interaction, we conducted a molecular dynamics simulation of CXCL8 in complex with full‐length CXC‐class chemokine receptor 1. We introduced a linker to provide an appropriate spacing between the termini and used an on‐resin side‐chain‐to‐tail cyclization strategy. Upon chemokine binding, the fluorescence intensity of the tetramethylrhodamine (TAMRA)‐labeled cyclic peptides increased whereas the fluorescence anisotropy decreased. Additional molecular dynamics simulations indicated that the fluorophore interacts with the peptide macrocycle so that chemokine binding leads to its displacement and observed changes in fluorescence. Macrocyclization of both 18‐amino acid‐long peptides led to the same low micromolar affinity for CXCL8. Likewise, both TAMRA‐labeled linear peptides interacted with CXCL8 with similar affinities. Interestingly, the linear TAMRA‐labeled peptides were more resistant to tryptic digestion than the unlabeled counterparts, whereas the cyclized peptides were not degraded at all. We conclude that the TAMRA fluorophore tends to interact with peptides altering their protease stability and behavior in fluorescence‐based assays. |
Uncontrolled Keywords: | binding assay, chemokine‐receptor interaction, peptide macrocycles, stability, TAMRA labeling |
Identification Number: | e3486 |
Status: | Publisher's Version |
URN: | urn:nbn:de:tuda-tuprints-242980 |
Classification DDC: | 500 Science and mathematics > 540 Chemistry 500 Science and mathematics > 570 Life sciences, biology |
Divisions: | 10 Department of Biology > Computational Biology and Simulation 07 Department of Chemistry > Clemens-Schöpf-Institut > Fachgebiet Biochemie > Biologische Chemie |
Date Deposited: | 07 Aug 2023 08:11 |
Last Modified: | 17 Oct 2023 07:58 |
SWORD Depositor: | Deep Green |
URI: | https://tuprints.ulb.tu-darmstadt.de/id/eprint/24298 |
PPN: | 512226970 |
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