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Based on the Bunch Phase Timing System (BuTiS) local analog radio frequency reference signals (RF references) like the particle revolution frequency and their multiple harmonics will be generated. These references are used to control the phase of the accelerator cavities to altering harmonics of the bunch revolution frequency. Delay or phase shifts from the FAIR-Center to references at the BuTiS endpoints are already compensated by the BuTiS receivers. Phase shifts from the RF reference generators to LLRF electronics can be compensated by controlling the output phases of the DDS modules of the RF references. However phase shift delays of multiple harmonics at the same interconnecting electrical path are not identical at the same time. Configurable electronics manage phase calibration of the RF references to their endpoints. Calibration may depend on frequency and harmonic of the RF reference, aging as well as on thermal effects. The electrical length and impedance of interconnecting cables for phase control loops can be compensated. This is an important feature, in particular if control loops are switched between different harmonic frequencies.