Lermyte, Frederik (2024)
The need for open and FAIR data in top‐down proteomics.
In: Proteomics : Proteomics and Systems Biology, 2024, 24 (3-4)
doi: 10.26083/tuprints-00027108
Article, Secondary publication, Publisher's Version
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Item Type: | Article |
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Type of entry: | Secondary publication |
Title: | The need for open and FAIR data in top‐down proteomics |
Language: | English |
Date: | 17 June 2024 |
Place of Publication: | Darmstadt |
Year of primary publication: | February 2024 |
Place of primary publication: | Weinheim |
Publisher: | Wiley-VCH |
Journal or Publication Title: | Proteomics : Proteomics and Systems Biology |
Volume of the journal: | 24 |
Issue Number: | 3-4 |
Collation: | 3 Seiten |
DOI: | 10.26083/tuprints-00027108 |
Corresponding Links: | |
Origin: | Secondary publication DeepGreen |
Abstract: | In recent years, there has been a tremendous evolution in the high‐throughput, tandem mass spectrometry‐based analysis of intact proteins, also known as top‐down proteomics (TDP). Both hardware and software have developed to the point that the technique has largely entered the mainstream, and large‐scale, ambitious, multi‐laboratory initiatives have started to make their appearance in the literature. For this, however, more convenient and robust data sharing and reuse will be required. Walzer et al. have created TopDownApp, a customisable, open platform for visualisation and analysis of TDP data, which they hope will be a step in this direction. As they point out, other benefits of such data sharing and interoperability would include reanalysis of published datasets, as well as the prospect of using large amounts of data to train machine learning algorithms. In time, this work could prove to be a valuable resource in the move towards a future of greater TDP data findability, accessibility, interoperability and reusability. |
Uncontrolled Keywords: | FAIR data, mass spectrometry, open science, top‐down proteomics |
Identification Number: | Artikel-ID: 2300354 |
Status: | Publisher's Version |
URN: | urn:nbn:de:tuda-tuprints-271087 |
Additional Information: | Special Issue: Top‐down proteomics and proteoforms |
Classification DDC: | 500 Science and mathematics > 540 Chemistry 500 Science and mathematics > 570 Life sciences, biology |
Divisions: | 07 Department of Chemistry > Clemens-Schöpf-Institut > Fachgebiet Biochemie |
Date Deposited: | 17 Jun 2024 12:43 |
Last Modified: | 19 Jun 2024 06:16 |
SWORD Depositor: | Deep Green |
URI: | https://tuprints.ulb.tu-darmstadt.de/id/eprint/27108 |
PPN: | 519209850 |
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