2024

Schmidt, Michael ; Schroeder, Indra ; Bauer, Daniel ; Thiel, Gerhard ; Hamacher, Kay (2024)
Inferring functional units in ion channel pores via relative entropy.
In: European Biophysics Journal, 2021, 50 (1)
doi: 10.26083/tuprints-00023470
Article, Secondary publication, Publisher's Version

2022

Kunzmann, Patrick ; Anter, Jacob Marcel ; Hamacher, Kay (2022)
Adding hydrogen atoms to molecular models via fragment superimposition.
In: Algorithms for Molecular Biology, 2022, 17
doi: 10.26083/tuprints-00021427
Article, Secondary publication, Publisher's Version

Keul, Frank ; Hamacher, Kay (2022)
Consistent Quantification of Complex Dynamics via a Novel Statistical Complexity Measure.
In: Entropy, 2022, 24 (4)
doi: 10.26083/tuprints-00021285
Article, Secondary publication, Publisher's Version

Porro, Alessandro ; Saponaro, Andrea ; Gasparri, Federica ; Bauer, Daniel ; Gross, Christine ; Pisoni, Matteo ; Abbandonato, Gerardo ; Hamacher, Kay ; Santoro, Bina ; Thiel, Gerhard ; Moroni, Anna (2022)
The HCN domain couples voltage gating and cAMP response in hyperpolarization-activated cyclic nucleotide-gated channels.
In: eLife, 2019, 2019
doi: 10.26083/tuprints-00013344
Article, Secondary publication, Publisher's Version

Kunzmann, Patrick ; Hamacher, Kay (2022)
Biotite: a unifying open source computational biology framework in Python.
In: BMC Bioinformatics, 2022, 19
doi: 10.26083/tuprints-00012854
Article, Secondary publication, Publisher's Version

Schmidt, Michael ; Hamacher, Kay (2022)
hoDCA: higher order direct-coupling analysis.
In: BMC Bioinformatics, 2018, 19
doi: 10.26083/tuprints-00012863
Article, Secondary publication, Publisher's Version

2020

Kunzmann, Patrick ; Mayer, Benjamin E. ; Hamacher, Kay (2020)
Substitution matrix based color schemes for sequence alignment visualization.
In: BMC Bioinformatics, 2020, 21 (1)
doi: 10.25534/tuprints-00013521
Article, Secondary publication, Publisher's Version

Buchmann, Johannes ; Geihs, Matthias ; Hamacher, Kay ; Katzenbeisser, Stefan ; Stammler, Sebastian (2020)
Long-term integrity protection of genomic data.
In: EURASIP Journal on Information Security, 2019, 2019 (1)
doi: 10.25534/tuprints-00011399
Article, Secondary publication, Publisher's Version

2017

Keul, Frank ; Hess, Martin ; Goesele, Michael ; Hamacher, Kay (2017)
PFASUM: a substitution matrix from Pfam structural alignments.
In: BMC Bioinformatics, 2017, 18 (1)
Article, Secondary publication, Publisher's Version

Jager, Sven ; Schiller, Benjamin ; Babel, Philipp ; Blumenroth, Malte ; Strufe, Thorsten ; Hamacher, Kay (2017)
StreAM-Tg : algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.
In: Algorithms for Molecular Biology, 2017, 12 (1)
Article, Secondary publication, Publisher's Version