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¹H, ¹³C and ¹⁵N and ³¹P chemical shift assignment for stem-loop 4 from the 5′-UTR of SARS-CoV-2

Vögele, Jennifer ; Ferner, Jan-Peter ; Altincekic, Nadide ; Bains, Jasleen Kaur ; Ceylan, Betül ; Fürtig, Boris ; Grün, J. Tassilo ; Hengesbach, Martin ; Hohmann, Katharina F. ; Hymon, Daniel ; Knezic, Bozana ; Löhr, Frank ; Peter, Stephen A. ; Pyper, Dennis ; Qureshi, Nusrat S. ; Richter, Christian ; Schlundt, Andreas ; Schwalbe, Harald ; Stirnal, Elke ; Sudakov, Alexey ; Wacker, Anna ; Weigand, Julia E. ; Wirmer-Bartoschek, Julia ; Wöhnert, Jens ; Duchardt-Ferner, Elke (2024)
¹H, ¹³C and ¹⁵N and ³¹P chemical shift assignment for stem-loop 4 from the 5′-UTR of SARS-CoV-2.
In: Biomolecular NMR Assignments, 2021, 15 (2)
doi: 10.26083/tuprints-00023515
Article, Secondary publication, Publisher's Version

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Item Type: Article
Type of entry: Secondary publication
Title: ¹H, ¹³C and ¹⁵N and ³¹P chemical shift assignment for stem-loop 4 from the 5′-UTR of SARS-CoV-2
Language: English
Date: 30 September 2024
Place of Publication: Darmstadt
Year of primary publication: 2021
Place of primary publication: Dordrecht
Publisher: Springer Netherlands
Journal or Publication Title: Biomolecular NMR Assignments
Volume of the journal: 15
Issue Number: 2
DOI: 10.26083/tuprints-00023515
Corresponding Links:
Origin: Secondary publication DeepGreen
Abstract:

The SARS-CoV-2 virus is the cause of the respiratory disease COVID-19. As of today, therapeutic interventions in severe COVID-19 cases are still not available as no effective therapeutics have been developed so far. Despite the ongoing development of a number of effective vaccines, therapeutics to fight the disease once it has been contracted will still be required. Promising targets for the development of antiviral agents against SARS-CoV-2 can be found in the viral RNA genome. The 5′- and 3′-genomic ends of the 30 kb SCoV-2 genome are highly conserved among Betacoronaviruses and contain structured RNA elements involved in the translation and replication of the viral genome. The 40 nucleotides (nt) long highly conserved stem-loop 4 (5_SL4) is located within the 5′-untranslated region (5′-UTR) important for viral replication. 5_SL4 features an extended stem structure disrupted by several pyrimidine mismatches and is capped by a pentaloop. Here, we report extensive ¹H, ¹³C and ¹⁵N and ³¹P resonance assignments of 5_SL4 as the basis for in-depth structural and ligand screening studies by solution NMR spectroscopy.

Uncontrolled Keywords: SARS-CoV-2, RNA genome, 5′-UTR, 5_SL4, Solution NMR spectroscopy, COVID19-NMR
Status: Publisher's Version
URN: urn:nbn:de:tuda-tuprints-235157
Classification DDC: 500 Science and mathematics > 540 Chemistry
500 Science and mathematics > 570 Life sciences, biology
Divisions: 10 Department of Biology > RNA Biochemistry
Date Deposited: 30 Sep 2024 12:09
Last Modified: 30 Sep 2024 12:09
SWORD Depositor: Deep Green
URI: https://tuprints.ulb.tu-darmstadt.de/id/eprint/23515
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